A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

I

i - Variable in class edu.iu.pcl.absurdist.absurdist.Link

importSourceFile() - Method in class edu.iu.pcl.absurdist.driver.ApplicDriver

Imports one ("Original") concept system from text data file, and creates the second ("Noisy") based on it.

importTargetFile() - Method in class edu.iu.pcl.absurdist.driver.ApplicDriver

Import the second ("noisy") concept system from text data file.

IncorrectFormatException - exception edu.iu.iv.core.persistence.IncorrectFormatException.

An IncorrectFormatException is thrown by a persister whenever the data that it expects is different from what it actually finds in the resource descriptor.

IncorrectFormatException() - Constructor for class edu.iu.iv.core.persistence.IncorrectFormatException

Creates a new exception.

IncorrectFormatException(String) - Constructor for class edu.iu.iv.core.persistence.IncorrectFormatException

Creates a new exception with the specified detail message.

INDEGREE - Static variable in class edu.iu.iv.toolkits.networkanalysistoolkit.analysis.VertexDegreeDistributions

inhib - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Inhibitor I[step][row][col].

init() - Method in class edu.iu.pcl.absurdist.driver.AppletDriver

initExSim() - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Initialize external similarity matrix to all 0's.

initGUI() - Method in class edu.iu.iv.modeling.barabasialbertmodel.BarabasiAlbertModelGUI

Initializes the GUI.

initGUI() - Method in class edu.iu.pcl.absurdist.AbsurdistLauncherGUI

initGUI() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.NetworkAnalysisToolkitGUI

Initializes the GUI.

initGUI() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.GraphTypeDialog

Initializes the GUI.

initGUI() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.GraphPruningDialog

Initializes the GUI.

initGUI() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.GraphPathsDialog

Initializes the GUI.

initGUI() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.DegreeDistributionsDialog

Initializes the GUI.

initGUI() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.ClusteringCoefficientsDialog

Initializes the GUI.

INITIAL - Static variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Initial status without concept system created.

Initializable - interface edu.iu.iv.common.boot.Initializable.

A class that is initializable.

initialize(Collection) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Initializes the group of Authors with the specified Collection

initialize(Collection) - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationGroup

Initializes the group of Publications with the specified Collection

initialize(Collection) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Initializes the group of Topics with the specified Collection

initialize(Collection) - Method in interface edu.iu.iv.modeling.tarl.util.AuthorsTopicBucket

Initializes the Bucket with Authors from the collection.

initialize(Collection) - Method in interface edu.iu.iv.modeling.tarl.topic.TopicGroup

Initializes the group of Topics with the specified Collection

initialize(Collection) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Initializes the group of Publications with the specified Collection

initialize(Collection) - Method in class edu.iu.iv.modeling.tarl.util.impl.DefaultAuthorsTopicBucket

Initializes the Bucket with Authors from the collection

initialize(Collection) - Method in interface edu.iu.iv.modeling.tarl.author.AuthorGroup

Initializes the group of Authors with the specified Collection

initialize(ConfigFile) - Method in class edu.iu.iv.common.IVCInitializer

Starts up IVC and loads plugins and persisters from the given ConfigFile.

initialize(ConfigFile) - Method in interface edu.iu.iv.common.boot.Initializable

Given a config file, this initializable object will initialize itself.

initialize(File) - Method in interface edu.iu.iv.modeling.tarl.input.InputReader

Initializes the model parameters with values from the given file

initialize(File) - Method in interface edu.iu.iv.modeling.tarl.publication.AgingHelperInterface

Initializes the aging helper

initialize(File) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultAgingHelper

Initializes the aging helper

initialize(File) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultInputReader

Initializes the model parameters with the appropriate values

initialize(int) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic

Initializes the Topic with the given integer identification

initialize(int) - Method in interface edu.iu.iv.modeling.tarl.topic.Topic

Initialize the Topic with the given integer as the unique identifier.

initialize(int, int, Topic, AuthorGroup) - Method in interface edu.iu.iv.modeling.tarl.publication.Publication

Initializes the Publications with the specified parameters

initialize(int, int, Topic, AuthorGroup) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublication

Initializes an instance of a Publication with the specified id, Topic and the group of Authors

initialize(int, int, Topic, AuthorGroup, PublicationGroup) - Method in interface edu.iu.iv.modeling.tarl.publication.Publication

Initializes the Publications with the specified parameters

initialize(int, int, Topic, AuthorGroup, PublicationGroup) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublication

Initializes an instance of a Publication with the specified id, Topic, the group of Authors and the group of Publications

initialize(int, Topic) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor

Initializes the Author with the specified identifier and Topic

initialize(int, Topic) - Method in interface edu.iu.iv.modeling.tarl.author.Author

Initializes the Author with the specified identifier and Topic.

initialize(int, Topic, int) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor

Initializes the Author with the specified identifier, Topic and the maximum age

initialize(int, Topic, int) - Method in interface edu.iu.iv.modeling.tarl.author.Author

Initializes the Author with the specified identifier, Topic and the maximum age.

initialize(PublicationGroup, AuthorGroup, TopicGroup) - Method in class edu.iu.iv.modeling.tarl.output.impl.DefaultOutputWriter

Initializes the OutputWriter with the given publications and authors

initialize(PublicationGroup, AuthorGroup, TopicGroup) - Method in interface edu.iu.iv.modeling.tarl.output.OutputWriter

Initializes the OutputWriter with the given publications, authors and topics

initializeAuthors(AuthorParameters) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorManager

Initializes the Author environment to enable various operations on the Authors

initializeAuthors(AuthorParameters) - Method in interface edu.iu.iv.modeling.tarl.author.AuthorManager

Initializes the Author environment to enable various operations on the Authors.

initializeDefault() - Method in interface edu.iu.iv.modeling.tarl.input.TopicParameters

Initializes the TopicParameters with default values

initializeDefault() - Method in interface edu.iu.iv.modeling.tarl.input.PublicationParameters

Initializes the PublicationParameters with default values

initializeDefault() - Method in interface edu.iu.iv.modeling.tarl.input.MainParameters

Initializes the MainParameters with default values

initializeDefault() - Method in interface edu.iu.iv.modeling.tarl.input.HelperParameters

Initializes the HelperParameters with default values

initializeDefault() - Method in interface edu.iu.iv.modeling.tarl.input.ExecuterParameters

Initializes the ExecuterParameters with default values

initializeDefault() - Method in interface edu.iu.iv.modeling.tarl.input.AuthorParameters

Initializes the AuthorParameters with default values

initializeDefault() - Method in interface edu.iu.iv.modeling.tarl.util.YearInformation

Initializes the Year Information using default values

initializeDefault() - Method in class edu.iu.iv.modeling.tarl.util.impl.DefaultYearInformation

Initializes the YearInformation of the model with default values

initializeDefault() - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultTopicParameters

Initializes the TopicParameters with default values

initializeDefault() - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Initializes the PublicationParameters with default values

initializeDefault() - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultMainParameters

Initializes the MainParameters with default values

initializeDefault() - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultHelperParameters

Initializes the HelperParameters with the specified values.

initializeDefault() - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Initializes the ExecuterParameters with default values

initializeDefault() - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultAuthorParameters

Initializes the AuthorParameters with default values

initializeModel(ExecuterParameters, File) - Method in class edu.iu.iv.modeling.tarl.main.impl.DefaultTarlExecuter

Initializes itself with the corresponding model parameters

initializeModel(ExecuterParameters, File) - Method in interface edu.iu.iv.modeling.tarl.main.TarlExecuter

Initializes itself with the corresponding input parameters.

initializeModel(HelperParameters, File) - Method in class edu.iu.iv.modeling.tarl.main.impl.DefaultTarlHelper

Initializes the Tarl model

initializeModel(HelperParameters, File) - Method in interface edu.iu.iv.modeling.tarl.main.TarlHelper

Initializes the Tarl model.

initializePublications(PublicationParameters, File) - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationManager

Initializes the Publication environment to enable various operations on the Publications.

initializePublications(PublicationParameters, File) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationManager

Initializes the Publications environment with the specified model parameters

initializeTopics(TopicParameters) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicManager

Initializes the Topic environment to enable various operations on the Topics.

initializeTopics(TopicParameters) - Method in interface edu.iu.iv.modeling.tarl.topic.TopicManager

Initializes the Topic environment to enable various operations on the Topics.

InputReader - interface edu.iu.iv.modeling.tarl.input.InputReader.

This interface is used to read in the Model Parameters for the TarlMainInterface from the specified input script file on the file system

inSim - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Internal similarity, also called activator, R[step][row][col].

IntComponent - class edu.iu.iv.common.util.algorithmview.IntComponent.

An algorithm view component for editing native ints.

IntComponent() - Constructor for class edu.iu.iv.common.util.algorithmview.IntComponent

intersection(AuthorGroup) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Modifies the AuthorGroup to be the intersection of the Group and the specified AuthorGroup.

intersection(AuthorGroup, AuthorGroup) - Static method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Returns the intersection of two specified AuthorGroups.

intersection(Collection) - Method in class edu.iu.iv.modeling.tarl.util.impl.ExtendedHashSet

Modifies the Set to be the intersection of the Set and the specified Collection.

intersection(Collection, Collection) - Static method in class edu.iu.iv.modeling.tarl.util.impl.ExtendedHashSet

Returns the intersection of two specified Collections.

intersection(PublicationGroup) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Modifies the PublicationGroup to be the intersection of the Group and the specified PublicationGroup.

intersection(PublicationGroup, PublicationGroup) - Static method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Returns the intersection of two specified PublicationGroups.

intersection(TopicGroup) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Modifies the TopicGroup to be the intersection of the Group and the specified TopicGroup.

intersection(TopicGroup, TopicGroup) - Static method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Returns the intersection of two specified TopicGroups.

intLoop - Static variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Sampling interval for plots.

IOHandler - class edu.iu.iv.common.IOHandler.

IOHandler() - Constructor for class edu.iu.iv.common.IOHandler

isActive() - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor

Tests whether the Author is active for the current year

isActive() - Method in interface edu.iu.iv.modeling.tarl.author.Author

Tests whether the Author is active

isCategorized() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether this concept system is categorized, i.e. contains multiple concept categories.

isCompressionEnabled() - Method in class edu.iu.iv.common.persistence.BasicFileResourceDescriptor

isCompressionEnabled() - Method in interface edu.iu.iv.core.persistence.FileResourceDescriptor

Checks to see if the file represented by this resource descriptor is to be compressed or not.

isConnected() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.analysis.Network

isConverged() - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Returns true if the network iteration is converged; otherwise false.

isCreated() - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Returns true if the two systems are already created; otherwise false.

isDirected() - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.analysis.Network

isDirected() - Method in class edu.iu.pcl.absurdist.absurdist.Relation

Checks whether this relation is directed.

isDirected() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether this concept system contains any directed relation models.

isEmpty() - Method in class edu.iu.iv.search.p2p.bfs.SearchQueue

Check if the queue if empty

isInitial() - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Returns true if the two systems have not yet been created; otherwise false.

isIterating() - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Returns true if the network iteration is going on; otherwise false.

isLabeled() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether this concept system is labeled, i.e. contains multiple relation labels/models.

isMapped() - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Returns true if the two systems are already mapped; otherwise false.

isPropertyValueAcceptable(Object) - Method in class edu.iu.iv.core.property.Property

Returns whether the given object is acceptable as a property value for this property.

isqValid(int) - Method in class edu.iu.iv.analysis.pathfindernetworkscaling.PFNETValidator

isRanked() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether any of the concept in this concept system is ranked.

isRanked() - Method in class edu.iu.pcl.absurdist.absurdist.Concept

Checks whether this concept is ranked, i.e. has a non-default rank.

isrValid(int) - Method in class edu.iu.iv.analysis.pathfindernetworkscaling.PFNETValidator

isSimple() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether this is a simple system, i.e. contains only simple concepts and relations.

isSubset(AuthorGroup, AuthorGroup) - Static method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Tests whether the AuthorGroup specified by the second argument is a subset of the AuthorGroup specified by the first argument

isSubset(Collection, Collection) - Static method in class edu.iu.iv.modeling.tarl.util.impl.ExtendedHashSet

Tests whether the Collection specified by the second argument is a subset of the Collection specified by the first argument

isSubset(PublicationGroup) - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationGroup

Tests whether the specified PublicationGroup is a subset of the current one

isSubset(PublicationGroup) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Tests whether the specified PublicationGroup is a subset of the current one

isSubset(PublicationGroup, PublicationGroup) - Static method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Tests whether the PublicationGroup specified by the second argument is a subset of the PublicationGroup specified by the first argument

isSubset(TopicGroup, TopicGroup) - Static method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Tests whether the TopicGroup specified by the second argument is a subset of the TopicGroup specified by the first argument

isValid() - Method in class edu.iu.iv.common.util.algorithmview.StringComponent

isValid() - Method in class edu.iu.iv.common.util.algorithmview.IntComponent

isValid() - Method in class edu.iu.iv.common.util.algorithmview.DoubleComponent

isValid() - Method in class edu.iu.iv.common.util.algorithmview.BooleanComponent

isValid() - Method in interface edu.iu.iv.common.util.algorithmview.AlgorithmViewComponent

isValued() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether any of the concept in this concept system is valued.

isValued() - Method in class edu.iu.pcl.absurdist.absurdist.Concept

Checks whether this concept is valued, i.e. has non-zero feature values.

isWeighted() - Method in class edu.iu.pcl.absurdist.absurdist.Relation

Checks whether this relation is weighted.

isWeighted() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether any of the relation in this concept system is weighted.

itemEntered(VisualItem, MouseEvent) - Method in class edu.iu.iv.visualization.prefusedemos.ForceDemo.MouseOverControl

itemExited(VisualItem, MouseEvent) - Method in class edu.iu.iv.visualization.prefusedemos.ForceDemo.MouseOverControl

itemReleased(VisualItem, MouseEvent) - Method in class edu.iu.iv.visualization.prefusedemos.ForceDemo.MouseOverControl

iterateNet() - Method in class edu.iu.pcl.absurdist.penalty.PenaltyMinimizer

Iterates, using the steepest descent method, to find a correspondence between two concept systems minimizing the penalty functional.

ITERATING - Static variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Concept systems in mapping iteration.

iterCnt - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

How many iterations have actually been performed by the end of the iterative process

iterCnt2 - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Squares of the averaged values; maintained so that we can compute standard deviation

iterCntDev - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Standard deviations

IVC - class edu.iu.iv.core.IVC.

A singleton central IVC system.

IVCInitializer - class edu.iu.iv.common.IVCInitializer.

An Initializable which starts up IVC and loads plugins and persisters from the given ConfigFile.

IVCInitializer() - Constructor for class edu.iu.iv.common.IVCInitializer

IVCLoggerTest - class edu.iu.iv.common.logging.IVCLoggerTest.

IVCLoggerTest() - Constructor for class edu.iu.iv.common.logging.IVCLoggerTest

IVCLogManager - class edu.iu.iv.common.logging.IVCLogManager.

IVCLogManager() - Constructor for class edu.iu.iv.common.logging.IVCLogManager

IVCUserInterface - interface edu.iu.iv.core.IVCUserInterface.

The IVCUserInterface is the main gui of the IVC