A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

D

d - Variable in class edu.iu.pcl.absurdist.common.CorrespondenceVector

D - Static variable in class edu.iu.pcl.absurdist.gui.ConceptNode

d1 - Variable in class edu.iu.pcl.absurdist.absurdist.Concept

2D normalized values; can be extended to n-ary attribute vector.

d2 - Variable in class edu.iu.pcl.absurdist.absurdist.Concept

2D normalized values; can be extended to n-ary attribute vector.

dampingMode - Static variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Damping mode.

DatabaseResourceDescriptor - interface edu.iu.iv.core.persistence.DatabaseResourceDescriptor.

A descriptor that holds all data necessary for persisteing to and restoring from a database.

DataComponentMap - class edu.iu.iv.common.util.algorithmview.DataComponentMap.

A Map that analyzes the Algorithm, Validator, and Labeller methods and puts the appropriate data into a map that maps from label to ComponentData.

DataComponentMap.ComponentData - class edu.iu.iv.common.util.algorithmview.DataComponentMap.ComponentData.

A helper class that holds all specific data for each legally defined option from the inputted algorithm class.

DataComponentMap.ComponentData() - Constructor for class edu.iu.iv.common.util.algorithmview.DataComponentMap.ComponentData

DataComponentMap(Algorithm, Object, Object) - Constructor for class edu.iu.iv.common.util.algorithmview.DataComponentMap

Given an algorithm, validator and labeller, creates a map from label to ComponentData.

DataComponentMap(Algorithm, Object, Object, Object) - Constructor for class edu.iu.iv.common.util.algorithmview.DataComponentMap

Given an algorithm, validator and labeller, creates a map from label to ComponentData.

daxpy(double, CorrespondenceVector) - Method in class edu.iu.pcl.absurdist.common.CorrespondenceVector

this += alpha * v

deactivate() - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor

Notifies the Author of deactivation.

deactivate() - Method in interface edu.iu.iv.modeling.tarl.author.Author

Deactivates the Author explicitly which stops him/her from producing any more publications.

debug(String) - Static method in class edu.iu.pcl.absurdist.driver.SimpleDriver

debug(String) - Static method in class edu.iu.pcl.absurdist.driver.RandomDriver

debug(String) - Static method in class edu.iu.pcl.absurdist.driver.CmpDriver

debug(String) - Static method in class edu.iu.pcl.absurdist.driver.ApplicDriver

debug(String) - Static method in class edu.iu.pcl.absurdist.driver.AppletDriver

debugln(String) - Static method in class edu.iu.pcl.absurdist.driver.SimpleDriver

debugln(String) - Static method in class edu.iu.pcl.absurdist.driver.RandomDriver

debugln(String) - Static method in class edu.iu.pcl.absurdist.driver.CmpDriver

debugln(String) - Static method in class edu.iu.pcl.absurdist.driver.ApplicDriver

debugln(String) - Static method in class edu.iu.pcl.absurdist.driver.AppletDriver

DEFAULT_MENU_PATH - Variable in class edu.iu.iv.visualization.prefusedemos.ZoomingPanDemoPlugin

DEFAULT_MENU_PATH - Variable in class edu.iu.iv.visualization.prefusedemos.TreeMapDemoPlugin

DEFAULT_MENU_PATH - Variable in class edu.iu.iv.visualization.prefusedemos.ForceDemoPlugin

DEFAULT_MENU_PATH - Variable in class edu.iu.iv.visualization.prefusedemos.FisheyeMenuDemoPlugin

DEFAULT_MENU_PATH - Variable in class edu.iu.iv.visualization.prefusedemos.DistortionDemoPlugin

DEFAULT_UNSUPPORTED_REASON - Static variable in class edu.iu.iv.common.plugin.BasicPlugin

DefaultAgingHelper - class edu.iu.iv.modeling.tarl.publication.impl.DefaultAgingHelper.

This class provides a default implementation for the AgingHelperInterface.

DefaultAgingHelper() - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultAgingHelper

DefaultAuthor - class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor.

This class defines a default implementation for the AuthorInterface.

DefaultAuthor() - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor

Creates a new instance for an Author with the specified id and Topic.

DefaultAuthor(int, Topic) - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor

Creates a new instance for an Author with the specified id and Topic.

DefaultAuthor(int, Topic, int) - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthor

Creates a new instance for an Author with the specified id, Topic and maximum age

DefaultAuthorDatabase - class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorDatabase.

This class defines a default implementation for AuthorDatabaseInterface.

DefaultAuthorDatabase() - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorDatabase

Creates a new instance for a AuthorDatabase

DefaultAuthorGroup - class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup.

This class defines a default implementation of AuthorGroupInterface using the ExtendedHashSet.

DefaultAuthorGroup() - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Creates a new instance of an empty AuthorGroup

DefaultAuthorGroup(AuthorGroup) - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Creates a new instance for a AuthorGroup as an exact replica of the specified AuthorGroup object

DefaultAuthorManager - class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorManager.

This class defines a default implementation to the AuthorManagerInterface.

DefaultAuthorManager() - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorManager

Creates a new instance of the AuthorManager

DefaultAuthorParameters - class edu.iu.iv.modeling.tarl.input.impl.DefaultAuthorParameters.

This class defines a default implementation of the AuthorParametersInterface interface.

DefaultAuthorParameters() - Constructor for class edu.iu.iv.modeling.tarl.input.impl.DefaultAuthorParameters

Creates a new default instance for PublicationParameters.

DefaultAuthorsTopicBucket - class edu.iu.iv.modeling.tarl.util.impl.DefaultAuthorsTopicBucket.

This class is a default implemention of the AuthorsTopicBucketInterface.

DefaultAuthorsTopicBucket() - Constructor for class edu.iu.iv.modeling.tarl.util.impl.DefaultAuthorsTopicBucket

Creates a new empty instance of AuthorsTopicBucket.

DefaultAuthorUtility - class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorUtility.

This class extends the abstract class AbstractAuthorUtility.

DefaultAuthorUtility() - Constructor for class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorUtility

DefaultExecuterParameters - class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters.

This class defines a default implementation of the ExecuterParametersInterface interface.

DefaultExecuterParameters() - Constructor for class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Creates a new default instance of an ExecuterParameters.

DefaultHelperParameters - class edu.iu.iv.modeling.tarl.input.impl.DefaultHelperParameters.

This class defines a default implementation of the HelperParametersInterface interface.

DefaultHelperParameters() - Constructor for class edu.iu.iv.modeling.tarl.input.impl.DefaultHelperParameters

Creates a new default instance of an HelperParameters.

DefaultInputReader - class edu.iu.iv.modeling.tarl.input.impl.DefaultInputReader.

This class defines a default implementation to the InputReaderInterface by reading the model parameters from an input script file stored on the file system.

DefaultInputReader() - Constructor for class edu.iu.iv.modeling.tarl.input.impl.DefaultInputReader

DefaultMainParameters - class edu.iu.iv.modeling.tarl.input.impl.DefaultMainParameters.

This class defines a default implementation of the MainParametersInterface interface.

DefaultMainParameters() - Constructor for class edu.iu.iv.modeling.tarl.input.impl.DefaultMainParameters

Creates a new default instance of a MainParameters.

DefaultOutputWriter - class edu.iu.iv.modeling.tarl.output.impl.DefaultOutputWriter.

This class provides a default implementation of the OutputWriterInterface in order to write the Output Files.

DefaultOutputWriter() - Constructor for class edu.iu.iv.modeling.tarl.output.impl.DefaultOutputWriter

Specifies a default constructor

DefaultPublication - class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublication.

This class defines a default implementation of a PublicationInterface.

DefaultPublication() - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublication

Creates a new instance of a default Publication

DefaultPublication(int, int, Topic, AuthorGroup) - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublication

Creates a new instance for an Publication with the specified id and Topic.

DefaultPublication(int, int, Topic, AuthorGroup, PublicationGroup) - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublication

Creates a new instance for a Publication with the specified id, Topic, authors and citations

DefaultPublicationDatabase - class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationDatabase.

This class defines a default implementation of PublicationDatabaseInterface.

DefaultPublicationDatabase() - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationDatabase

Creates a new instance for a PublicationDatabase

DefaultPublicationGroup - class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup.

This class defines a default implementation of the PublicationGroupInterface.

DefaultPublicationGroup() - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Creates a new instance of an empty PublicationGroup

DefaultPublicationGroup(PublicationGroup) - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Creates a new instance for a PublicationGroup as an exact replica of the specified PublicationGroup object

DefaultPublicationManager - class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationManager.

This class defines a default implementation of the PublicationManagerInterface which manages the group of publications.

DefaultPublicationManager() - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationManager

Creates a new instance of a PublicationManager with the default current year 0

DefaultPublicationManager(PublicationParameters) - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationManager

Creates a new instance of a PublicationManager with the given current year

DefaultPublicationParameters - class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters.

This class defines a default implementation of the PublicationParametersInterface interface.

DefaultPublicationParameters() - Constructor for class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Creates a new default instance for PublicationParameters.

DefaultPublicationUtility - class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationUtility.

This class defines a default extension of AbstractPublicationUtility by defining all the abstract methods.

DefaultPublicationUtility() - Constructor for class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationUtility

DefaultTarlExecuter - class edu.iu.iv.modeling.tarl.main.impl.DefaultTarlExecuter.

This class defines a default implementation of the TarlExecuterInterface.

DefaultTarlExecuter() - Constructor for class edu.iu.iv.modeling.tarl.main.impl.DefaultTarlExecuter

Creates a new instance of the TarlExecuter

DefaultTarlHelper - class edu.iu.iv.modeling.tarl.main.impl.DefaultTarlHelper.

This class defines a default implementation of the TarlHelperInterface.

DefaultTarlHelper() - Constructor for class edu.iu.iv.modeling.tarl.main.impl.DefaultTarlHelper

Creates a new instance of the TarlHelper

DefaultTopic - class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic.

This class provides a default implementation of the TopicInterface.

DefaultTopic() - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic

Creates a new instance for a default Topic.

DefaultTopic(int) - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic

Creates a new instance for a Topic with the specified id.

DefaultTopic(int, String) - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic

Creates a new instance for a Topic with the specified id, and the specified name

DefaultTopic(int, String, ExtendedHashSet) - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic

Creates a new instance for a DefaultTopic with the specified id, name and Topic

DefaultTopicDatabase - class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicDatabase.

This class defines a default implementation of TopicDatabaseInterface.

DefaultTopicDatabase() - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicDatabase

Creates a new instance for a TopicDatabase

DefaultTopicGroup - class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup.

This class defines the Group of Topics.

DefaultTopicGroup() - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Creates a new instance of an empty TopicGroup

DefaultTopicGroup(TopicGroup) - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Creates a new instance for a TopicGroup as an exact replica of the specified TopicGroup object

DefaultTopicManager - class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicManager.

This class defines a default implementation of the TopicManagerInterface.

DefaultTopicManager() - Constructor for class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicManager

Creates a new instance of the TopicManager

DefaultTopicParameters - class edu.iu.iv.modeling.tarl.input.impl.DefaultTopicParameters.

This class defines a default implementation of the TopicParametersInterface interface.

DefaultTopicParameters() - Constructor for class edu.iu.iv.modeling.tarl.input.impl.DefaultTopicParameters

Creates a new default instance for TopicParameters.

DefaultYearInformation - class edu.iu.iv.modeling.tarl.util.impl.DefaultYearInformation.

This class defines a default implementation of the YearInformationInterface interface.

DefaultYearInformation() - Constructor for class edu.iu.iv.modeling.tarl.util.impl.DefaultYearInformation

Creates a new instance for a YearInformation.

DEGREE - Static variable in class edu.iu.iv.toolkits.networkanalysistoolkit.analysis.VertexDegreeDistributions

degree(int) - Method in class edu.iu.pcl.absurdist.common.CSGI

The degree of node j

DegreeDistributionsDialog - class edu.iu.iv.toolkits.networkanalysistoolkit.gui.DegreeDistributionsDialog.

This code was generated using CloudGarden's Jigloo SWT/Swing GUI Builder, which is free for non-commercial use.

DegreeDistributionsDialog(Frame) - Constructor for class edu.iu.iv.toolkits.networkanalysistoolkit.gui.DegreeDistributionsDialog

DelimitedDenseDoubleMatrixModelPersister - class edu.iu.iv.common.persistence.ivc.DelimitedDenseDoubleMatrixModelPersister.

This persister can restore dense matrices to a delimited file.

DelimitedDenseDoubleMatrixModelPersister() - Constructor for class edu.iu.iv.common.persistence.ivc.DelimitedDenseDoubleMatrixModelPersister

DelimitedDenseDoubleMatrixModelPersisterTest - class edu.iu.iv.common.persistence.ivc.DelimitedDenseDoubleMatrixModelPersisterTest.

DelimitedDenseDoubleMatrixModelPersisterTest(String) - Constructor for class edu.iu.iv.common.persistence.ivc.DelimitedDenseDoubleMatrixModelPersisterTest

Constructor for DelimitedDenseDoubleMatrixModelPersisterTest.

DelimitedSparseDoubleMatrixModelPersister - class edu.iu.iv.common.persistence.ivc.DelimitedSparseDoubleMatrixModelPersister.

This persister can persist to and restore from a delimited file using a sparse matrix format.

DelimitedSparseDoubleMatrixModelPersister() - Constructor for class edu.iu.iv.common.persistence.ivc.DelimitedSparseDoubleMatrixModelPersister

DelimitedSparseDoubleMatrixModelPersisterTest - class edu.iu.iv.common.persistence.ivc.DelimitedSparseDoubleMatrixModelPersisterTest.

DelimitedSparseDoubleMatrixModelPersisterTest(String) - Constructor for class edu.iu.iv.common.persistence.ivc.DelimitedSparseDoubleMatrixModelPersisterTest

Constructor for DelimitedSparseDoubleMatrixModelPersisterTest.

DenseDoubleMatrixModel - class edu.iu.iv.common.datamodels.matrixmodel.DenseDoubleMatrixModel.

An adapter class that implements the DoubleMatrixModel interface and extends the Cern Colt API's fast hashed implementation of a dense 2D matrix.

DenseDoubleMatrixModel(double[][]) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.DenseDoubleMatrixModel

Creates a matrix and fills them with the elements of the array passed in.

DenseDoubleMatrixModel(int, int) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.DenseDoubleMatrixModel

Creates a matrix with numRows rows and numCols columns and fills them with zero values.

DenseDoubleMatrixModelTest - class edu.iu.iv.common.datamodels.matrixmodel.DenseDoubleMatrixModelTest.

DenseDoubleMatrixModelTest(String) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.DenseDoubleMatrixModelTest

Constructor for DenseDoubleMatrixModelTest.

DenseObjectMatrixModel - class edu.iu.iv.common.datamodels.matrixmodel.DenseObjectMatrixModel.

DenseObjectMatrixModel(int, int) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.DenseObjectMatrixModel

DenseObjectMatrixModel(Object[][]) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.DenseObjectMatrixModel

Dequeue() - Method in class edu.iu.iv.search.p2p.bfs.SearchQueue

Return the value of first element in the queue

DESCRIPTION - Variable in class edu.iu.iv.visualization.prefusedemos.ZoomingPanDemoPlugin

DESCRIPTION - Variable in class edu.iu.iv.visualization.prefusedemos.TreeMapDemoPlugin

DESCRIPTION - Variable in class edu.iu.iv.visualization.prefusedemos.ForceDemoPlugin

DESCRIPTION - Variable in class edu.iu.iv.visualization.prefusedemos.FisheyeMenuDemoPlugin

DESCRIPTION - Variable in class edu.iu.iv.visualization.prefusedemos.DistortionDemoPlugin

difference(AuthorGroup) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Modifies the Group to be the difference of the current AuthorGroup and the specified AuthorGroup.

difference(AuthorGroup, AuthorGroup) - Static method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Returns the difference of the two specified AuthorGroups.

difference(Collection) - Method in class edu.iu.iv.modeling.tarl.util.impl.ExtendedHashSet

Modifies the Set to be the difference of the current Set and the specified Collection.

difference(Collection, Collection) - Static method in class edu.iu.iv.modeling.tarl.util.impl.ExtendedHashSet

Returns the difference of the two specified Collections.

difference(PublicationGroup) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Modifies the Group to be the difference of the current PublicationGroup and the specified PublicationGroup.

difference(PublicationGroup, PublicationGroup) - Static method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Returns the difference of the two specified PublicationGroups.

difference(TopicGroup) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Modifies the Group to be the difference of the current TopicGroup and the specified TopicGroup.

difference(TopicGroup, TopicGroup) - Static method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Returns the difference of the two specified TopicGroups.

difWeight(Relation) - Method in class edu.iu.pcl.absurdist.absurdist.Relation

Return the difference between the weight of this relation and the specified one.

dim2pos(double, int, int) - Static method in class edu.iu.pcl.absurdist.gui.ConceptNode

Encodes concept dimension value into node position coordinates.

direct2style(boolean) - Static method in class edu.iu.pcl.absurdist.gui.RelationLink

Encodes relation direction into link style.

directed - Variable in class edu.iu.pcl.absurdist.absurdist.RelationModel

Whether the relation is directed.

DIRECTED - Static variable in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Direction mode for directed relation models.

display - Static variable in class edu.iu.iv.visualization.prefusedemos.BalloonGraphDemo

distance(Concept) - Method in class edu.iu.pcl.absurdist.absurdist.FeatureVectorConcept

Computes the normalized semantic distance between this concept and the specified one.

distance(Concept) - Method in class edu.iu.pcl.absurdist.absurdist.Concept

Computes the normalized semantic distance between this concept and the specified one.

distance(ConceptNode) - Method in class edu.iu.pcl.absurdist.gui.ConceptNode

Computes the geometric distance between this node and the specified one.

DistortionDemo - class edu.iu.iv.visualization.prefusedemos.DistortionDemo.

Demonstration illustrating the use of distortion transformations on a visualization.

DistortionDemo() - Constructor for class edu.iu.iv.visualization.prefusedemos.DistortionDemo

Constructor that initializes everything and starts up the GUI.

DistortionDemoPlugin - class edu.iu.iv.visualization.prefusedemos.DistortionDemoPlugin.

DistortionDemoPlugin() - Constructor for class edu.iu.iv.visualization.prefusedemos.DistortionDemoPlugin

Constructor

DOCUMENTATION_LINK - Static variable in class edu.iu.iv.core.plugin.PluginProperty

Represents the property for a Documentation Link.

DoubleComponent - class edu.iu.iv.common.util.algorithmview.DoubleComponent.

An algorithm view component for editing native doubles.

DoubleComponent() - Constructor for class edu.iu.iv.common.util.algorithmview.DoubleComponent

DoubleMatrixModel - interface edu.iu.iv.core.datamodels.matrixmodel.DoubleMatrixModel.

This interface provides methods for accessing and modifying matrices holding double floating point primitive type elements.

dp(CorrespondenceVector) - Method in class edu.iu.pcl.absurdist.common.CorrespondenceVector

Dot product

drawArrow(Graphics, int, int, int, int, int, double) - Static method in class edu.iu.pcl.absurdist.gui.RelationLink

Draws an arrow from point P1(x1, y1) to point P2(x2, y2).

drawGraph() - Method in class edu.iu.iv.visualization.networks.jungfruchtermanrheingoldLayout.JUNGFruchtermanRheingoldLayout

Visualize the network graph

drawGraph() - Method in class edu.iu.iv.visualization.networks.jungspringlayout.JUNGSpringLayout

Visualize the network graph

drawGraph() - Method in class edu.iu.iv.visualization.p2p.p2pnetworkvisualization.P2PNetworkVisualization

Visualize the network graph

drawGraph() - Method in class edu.iu.iv.visualization.networks.jungcirclelayout.JUNGCircleLayout

Visualize the network graph

drawGraph() - Method in class edu.iu.iv.visualization.networks.jungkamadakawailayout.JUNGKamadaKawaiLayout

Visualize the network graph

DummySMFPersister - class edu.iu.iv.common.persistence.ivc.DummySMFPersister.

DummySMFPersister() - Constructor for class edu.iu.iv.common.persistence.ivc.DummySMFPersister