A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

S

save(Object, ResourceDescriptor) - Method in class edu.iu.iv.common.persistence.BasicPersistenceRegistry

Attempts to save the specified data model's data to the specified resource.

save(Object, ResourceDescriptor) - Method in interface edu.iu.iv.core.persistence.PersistenceRegistry

Saves a model to a data resource such as a file or a database.

save(Persister, Object) - Method in class edu.iu.iv.gui.save.FileSaver

saveFile() - Method in class edu.iu.pcl.absurdist.driver.ApplicDriver

SavePersisterChooser - class edu.iu.iv.gui.save.SavePersisterChooser.

SavePersisterChooser(String, boolean, boolean, boolean, boolean, Object) - Constructor for class edu.iu.iv.gui.save.SavePersisterChooser

SavePlugin - class edu.iu.iv.gui.save.SavePlugin.

Implements a basic plugin for saving objects.

SavePlugin() - Constructor for class edu.iu.iv.gui.save.SavePlugin

savePreferences() - Method in interface edu.iu.iv.gui.preferences.PreferencesPane

savePreferences() - Method in class edu.iu.iv.gui.preferences.MiscPreferencesPane

savePreferences() - Method in class edu.iu.iv.gui.preferences.MainPreferencesPane

saveSystems(String) - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Writes out the concept systems as Java serialized objects intoa file.

schedule(Algorithm) - Method in class edu.iu.iv.common.QueueScheduler

schedule(Algorithm) - Method in interface edu.iu.iv.core.Scheduler

Schedules the given algorithm to be run at a later time.

Scheduler - interface edu.iu.iv.core.Scheduler.

Scheduler for scheduling algorithms to be run.

searchNetwork(int, int) - Method in class edu.iu.iv.search.p2p.bfs.BreadthFirstSearch

Perform BFS on the network

searchNetwork(int, int) - Method in class edu.iu.iv.search.p2p.randomWalk.RandomWalk

Search random network

searchNetwork(int, int) - Method in class edu.iu.iv.search.p2p.can.CanSearch

This method performs search on the graph, given the source and target nodes.

searchNetwork(int, int) - Method in class edu.iu.iv.search.p2p.chord.ChordSearch

This method performs search on the graph, given the source and target nodes.

searchNetwork(int, int, double) - Method in class edu.iu.iv.search.p2p.bfs.BreadthFirstSearch

Perform BFS on the network

searchNetwork(int, int, int) - Method in class edu.iu.iv.search.p2p.randomWalk.RandomWalk

Search random network

SearchQueue - class edu.iu.iv.search.p2p.bfs.SearchQueue.

This method provides the queue functionality for BreadthFirstSearch.

SearchQueue() - Constructor for class edu.iu.iv.search.p2p.bfs.SearchQueue

set(int, int, double) - Method in interface edu.iu.iv.core.datamodels.matrixmodel.DoubleMatrixModel

Sets the value of the element at the specified row and column.

set(int, int, double) - Method in class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModel

set(int, int, Object) - Method in interface edu.iu.iv.core.datamodels.matrixmodel.ObjectMatrixModel

Sets the value of the element at the specified row and column.

setAbsurdist(Absurdist) - Method in class edu.iu.pcl.absurdist.gui.PlotPanel

This must not be done in the constructor.

setAbsurdist(Absurdist) - Method in class edu.iu.pcl.absurdist.gui.GraphPanel

setAgingEnabled(boolean) - Method in interface edu.iu.iv.modeling.tarl.input.PublicationParameters

Stores whether aging has been enabled for the model or not

setAgingEnabled(boolean) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Stores whether aging has been enabled for the model or not

setAgingFunctionFile(File) - Method in class edu.iu.iv.modeling.tarl.TarlAlgorithm

Set the file for the aging function.

setAuthorManager(AuthorManager) - Method in class edu.iu.iv.modeling.tarl.output.impl.JUNGGraphGenerator

setAuthorManager(AuthorManager) - Method in interface edu.iu.iv.modeling.tarl.output.GraphGenerator

Set the author manager for this generator.

setAuthorParameters(AuthorParameters) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the AuthorParameters for the model

setCacheSize(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruNetwork

Sets the number of nodes in the cache

setCacheSize(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruAlgorithm

Sets the cache size

setColumnLabel(int, String) - Method in interface edu.iu.iv.core.datamodels.matrixmodel.ObjectMatrixModel

Sets the label at the specified column to the specified text.

setColumnLabel(int, String) - Method in interface edu.iu.iv.core.datamodels.matrixmodel.DoubleMatrixModel

Sets the label at the specified column to the specified text.

setColumnLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.SparseObjectMatrixModel

setColumnLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModel

setColumnLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.DenseObjectMatrixModel

setColumnLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.DenseDoubleMatrixModel

setCompression(boolean) - Method in class edu.iu.iv.common.persistence.BasicFileResourceDescriptor

setCompression(boolean) - Method in interface edu.iu.iv.core.persistence.FileResourceDescriptor

Sets the compression to be enabled or disabled.

setConfigFile(ConfigFile) - Method in class edu.iu.iv.common.BasicIVC

setConfigFile(ConfigFile) - Method in class edu.iu.iv.core.IVC

Set the associated config file for the IVC system.

setDegree(int) - Method in class edu.iu.iv.modeling.p2p.hypergrid.HypergridAlgorithm

Set the degree of nodes in the Hypergrid network

setDescription(String) - Method in class edu.iu.iv.search.p2p.can.XmlFileFilter

Sets the human readable description of this filter.

setEndYear(int) - Method in interface edu.iu.iv.modeling.tarl.util.YearInformation

Stores the end year for the Model

setEndYear(int) - Method in class edu.iu.iv.modeling.tarl.util.impl.DefaultYearInformation

Stores the end year of the model

setErrorLogFile(File, boolean) - Method in class edu.iu.iv.common.BasicIVC

If it is desired to save log messages to a file, this method must be called before logging any messages.

setErrorLogFile(File, boolean) - Method in class edu.iu.iv.common.logging.IVCLogManager

setErrorLogFile(File, boolean) - Method in class edu.iu.iv.core.IVC

Sets the path to the log file.

setExecuterParameters(ExecuterParameters) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultHelperParameters

Stores the ExecuterParameters for the model

setFile(File) - Method in class edu.iu.iv.common.persistence.BasicFileResourceDescriptor

setFile(File) - Method in interface edu.iu.iv.core.persistence.FileResourceDescriptor

Sets the properties of this file based on the File object passed in.

setFileName(String) - Method in class edu.iu.iv.modeling.p2p.can.CanAlgorithm

This method sets the name of the file which'll store the network graph

setFileName(String) - Method in class edu.iu.iv.modeling.p2p.hypergrid.HypergridAlgorithm

This method sets the name of the file which'll store the network graph

setFileName(String) - Method in class edu.iu.iv.modeling.p2p.pru.PruAlgorithm

This method sets the name of the file which'll store the network graph

setFileName(String) - Method in class edu.iu.iv.modeling.p2p.chord.ChordAlgorithm

This method sets the name of the file which'll store the network graph

setFingerTableSize(int) - Method in class edu.iu.iv.modeling.p2p.chord.ChordAlgorithm

This method sets the minimum degree of the node

setGraph_FRIENDSTER(String) - Method in class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo

setGraph_GUIR(String) - Method in class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo

setGRAPH_TERROR(String) - Method in class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo

setGraph(Graph) - Method in class edu.iu.iv.visualization.networks.jungfruchtermanrheingoldLayout.JUNGFruchtermanRheingoldLayoutAlgorithm

Set the network graph to be visualized

setGraph(Graph) - Method in class edu.iu.iv.modeling.p2p.attackTolerance.AttackTolerance

Set the graph representing the network

setGraph(Graph) - Method in class edu.iu.iv.visualization.networks.jungspringlayout.JUNGSpringLayoutAlgorithm

Set the network graph to be visualized

setGraph(Graph) - Method in class edu.iu.iv.clustering.BetweennessCentralityGUI

setGraph(Graph) - Method in class edu.iu.iv.search.p2p.can.CanSearchAlgorithm

This method sets the graph object (representing the CAN network) on which search will be performed

setGraph(Graph) - Method in class edu.iu.iv.modeling.p2p.errorTolerance.ErrorTolerance

Set the graph representing the network

setGraph(Graph) - Method in class edu.iu.iv.visualization.p2p.p2pnetworkvisualization.P2PNetworkVisualizationAlgorithm

Set the network graph to be visualized

setGraph(Graph) - Method in class edu.iu.iv.visualization.networks.jungcirclelayout.JUNGCircleLayoutAlgorithm

Set the network graph to be visualized

setGraph(Graph) - Method in class edu.iu.iv.visualization.networks.jungkamadakawailayout.JUNGKamadaKawaiLayoutAlgorithm

Set the network graph to be visualized

setGraph(UndirectedSparseGraph) - Method in class edu.iu.iv.search.p2p.bfs.BreadthFirstSearch

This method sets the graph on which search is to be performed

setGraph(UndirectedSparseGraph) - Method in class edu.iu.iv.search.p2p.can.CanSearch

Set the graph to search

setHelperParameters(HelperParameters) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultMainParameters

Stores the HelperParameters for the model

setInputFile(File) - Method in class edu.iu.iv.visualization.prefusedemos.TreeMapDemo

setInputFile(File) - Method in class edu.iu.iv.visualization.prefusedemos.BalloonGraphDemo

Sets the input file.

setInputScriptFile(File) - Method in class edu.iu.iv.modeling.tarl.TarlAlgorithm

Set the input script file with which to initialize TARL

setKeywords(Collection) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic

Stores the list of keywords of the Topic

setLowerBound(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruNetwork

Sets the minimum degree of nodes in the network

setLowerBound(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruAlgorithm

Sets the minimum degree of nodes

setMaximumAge(int) - Method in interface edu.iu.iv.modeling.tarl.input.AuthorParameters

Stores the maximum age of the Authors

setMaximumAge(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultAuthorParameters

Stores the maximum age of the authors

setMessagePrefix(String) - Method in class edu.iu.iv.common.util.StreamRedirecter

setName(String) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopic

Stores the name of the Topic as a String

setNetwork(Network) - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.NetworkAnalysisToolkitGUI

setNetworkSize(int) - Method in class edu.iu.iv.modeling.p2p.can.CanAlgorithm

This method sets the size of the network to be built

setNetworkSize(int) - Method in class edu.iu.iv.modeling.p2p.hypergrid.HypergridAlgorithm

This method sets the size of the network to be built

setNetworkSize(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruNetwork

Sets the size of the network

setNetworkSize(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruAlgorithm

This method sets the size of the network to be built

setNetworkSize(int) - Method in class edu.iu.iv.modeling.p2p.chord.ChordAlgorithm

This method sets the size of the network to be built

setNext(QueueElement) - Method in class edu.iu.iv.search.p2p.bfs.QueueElement

This method sets the next element

setNumAuthorsAtStart(int) - Method in interface edu.iu.iv.modeling.tarl.input.ExecuterParameters

Stores the number of authors at the start of the Model

setNumAuthorsAtStart(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the number of authors at the start of the Model

setNumCoAuthors(int) - Method in interface edu.iu.iv.modeling.tarl.input.AuthorParameters

Stores the number of co-authors for each Author

setNumCoAuthors(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultAuthorParameters

Stores the number of co-authors for each author

setNumCreationAuthors(int) - Method in interface edu.iu.iv.modeling.tarl.input.ExecuterParameters

Stores the number of Authors to be created in numCreationYears years

setNumCreationAuthors(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the number of authors to be created in numCreationYears years

setNumCreationYears(int) - Method in interface edu.iu.iv.modeling.tarl.input.ExecuterParameters

Stores the number of years in which creation is supposed to take place

setNumCreationYears(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the number of years in which creation is supposed to take place

setNumDeactivationAuthors(int) - Method in interface edu.iu.iv.modeling.tarl.input.AuthorParameters

Stores the number of Authors to be deactivated in numDeactivationYears years

setNumDeactivationAuthors(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultAuthorParameters

Stores the number of authors to be deactivated in numDeactivationYears years

setNumDeactivationYears(int) - Method in interface edu.iu.iv.modeling.tarl.input.AuthorParameters

Stores the number of years in which deactivation is supposed to take place

setNumDeactivationYears(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultAuthorParameters

Stores the number of years in which deactivation is supposed to take place

setNumLevelsReferences(int) - Method in interface edu.iu.iv.modeling.tarl.input.PublicationParameters

Stores the number of levels of references considered for reading Publications

setNumLevelsReferences(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Stores the number of levels of references considered for reading publications

setNumNodes(int) - Method in class edu.iu.iv.modeling.p2p.attackTolerance.AttackTolerance

Set the number of highly-connected nodes that are deleted

setNumNodes(int) - Method in class edu.iu.iv.modeling.p2p.errorTolerance.ErrorTolerance

Set the number of nodes that are randomly deleted

setNumPublicationsAtStart(int) - Method in interface edu.iu.iv.modeling.tarl.input.ExecuterParameters

Stores the number of publications at the start of the Model

setNumPublicationsAtStart(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the number of publications at the start of the Model

setNumPublicationsCited(int) - Method in interface edu.iu.iv.modeling.tarl.input.PublicationParameters

Stores the number of Publications to be cited

setNumPublicationsCited(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Stores the number of publications to be cited

setNumPublicationsRead(int) - Method in interface edu.iu.iv.modeling.tarl.input.PublicationParameters

Stores the number of Publications to be read

setNumPublicationsRead(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Stores the number of publications to be read

setNumPublicationsWritten(int) - Method in interface edu.iu.iv.modeling.tarl.input.PublicationParameters

Stores the number of Publications to be written by each Author each year

setNumPublicationsWritten(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Stores the number of publications to be written by each author each year

setNumTopics(int) - Method in interface edu.iu.iv.modeling.tarl.input.TopicParameters

Stores the number of Topics for the Model

setNumTopics(int) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultTopicParameters

Stores the number of topics for the model

setPerlPath(String) - Method in class edu.iu.iv.common.util.perl.PerlRunner

setPlot(Absurdist) - Method in class edu.iu.pcl.absurdist.gui.PlotPanel

setPlotSteps(int) - Method in class edu.iu.pcl.absurdist.gui.PlotPanel

Sets the current plot step for all the plots.

setPluginPath(File) - Method in class edu.iu.iv.common.BasicIVC

setPluginPath(File) - Method in class edu.iu.iv.core.IVC

Sets the path to the plugin directory so that plugins may access files in the directory if they have some located there.

setPrev(QueueElement) - Method in class edu.iu.iv.search.p2p.bfs.QueueElement

This method sets the previous element

setPrintErrors(boolean) - Method in class edu.iu.iv.common.util.SystemCommandRunner

setPrintOutput(boolean) - Method in class edu.iu.iv.common.util.SystemCommandRunner

setProperty(String, String) - Method in class edu.iu.iv.common.boot.ConfigFile

Sets a property for the configuration.

setPropertyValue(Property, Object) - Method in class edu.iu.iv.core.property.PropertyMap

Sets an associated value for the property.

setPublicationManager(PublicationManager) - Method in class edu.iu.iv.modeling.tarl.output.impl.JUNGGraphGenerator

setPublicationManager(PublicationManager) - Method in interface edu.iu.iv.modeling.tarl.output.GraphGenerator

Set the publication manager for this generator.

setPublicationParameters(PublicationParameters) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the PublicationParameters for the model

setq(int) - Method in class edu.iu.iv.analysis.pathfindernetworkscaling.PFNETAlgorithm

setr(int) - Method in class edu.iu.iv.analysis.pathfindernetworkscaling.PFNETAlgorithm

setRowLabel(int, String) - Method in interface edu.iu.iv.core.datamodels.matrixmodel.ObjectMatrixModel

Sets the label of the specified row to the specified text.

setRowLabel(int, String) - Method in interface edu.iu.iv.core.datamodels.matrixmodel.DoubleMatrixModel

Sets the label of the specified row to the specified text.

setRowLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.SparseObjectMatrixModel

setRowLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModel

setRowLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.DenseObjectMatrixModel

setRowLabel(int, String) - Method in class edu.iu.iv.common.datamodels.matrixmodel.DenseDoubleMatrixModel

setScanPaths(String[]) - Method in class edu.iu.iv.common.util.JarScanner

Loads the classes from the jar files located at the given set of paths.

setScheduler(Scheduler) - Method in class edu.iu.iv.common.BasicIVC

setScheduler(Scheduler) - Method in class edu.iu.iv.core.IVC

Sets the scheduler to be used by the system.

setSourceNode(int) - Method in class edu.iu.iv.search.p2p.can.CanSearchAlgorithm

This method sets the source node to start the search

setSourceNode(int) - Method in class edu.iu.iv.search.p2p.chord.ChordSearchAlgorithm

Set the starting node for search

setStartYear(int) - Method in interface edu.iu.iv.modeling.tarl.util.YearInformation

Stores the start year for the Model

setStartYear(int) - Method in class edu.iu.iv.modeling.tarl.util.impl.DefaultYearInformation

Stores the start year of the model

setSteps(int) - Method in class edu.iu.pcl.absurdist.gui.Plot

Sets the number of steps.

setSystem(ConceptSystem, ConceptSystem) - Method in class edu.iu.pcl.absurdist.penalty.PenaltyMinimizer

setSystemN(ConceptSystem) - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Sets the target concepts system to be mapped to.

setSystemO(ConceptSystem) - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Sets the source concepts system to be mapped from.

setSystems(ConceptSystem, ConceptSystem) - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Sets the two concepts systems for mapping.

setTargetNode(int) - Method in class edu.iu.iv.search.p2p.can.CanSearchAlgorithm

This method sets the node to be searched (target node)

setTargetNode(int) - Method in class edu.iu.iv.search.p2p.chord.ChordSearchAlgorithm

Set the target node to search

setThreshold(double) - Method in class edu.iu.iv.search.p2p.bfs.BreadthFirstSearch

This method sets the threhold with which BFS will be performed

setTitle(String) - Method in class edu.iu.iv.visualization.p2p.p2pnetworkvisualization.P2PNetworkVisualizationAlgorithm

Set the title of the network graph

setTopicParameters(TopicParameters) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the TopicParameters for the model

setUp() - Method in class edu.iu.iv.common.BasicIVCTester

setUp() - Method in class edu.iu.iv.common.QueueSchedulerTester

Sets up the algorithm instance counter and execution list, and creates the scheduler and some dummy algorithms for testing.

setUp() - Method in class edu.iu.iv.common.persistence.BasicPersistenceRegistryTest

setUp() - Method in class edu.iu.iv.common.plugin.BasicPluginTester

Instantiates a BasicPlugin for testing, as well as some dummy models and a dummy view for support purposes.

setUp() - Method in class edu.iu.iv.common.plugin.BasicPluginRegistryTester

Instantiates a BasicPluginRegistry for testing, as well as several plugins and models to test it with.

setUp() - Method in class edu.iu.iv.common.boot.ConfigFileTester

setUpperBound(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruNetwork

Sets the maximum degree of nodes in the network

setUpperBound(int) - Method in class edu.iu.iv.modeling.p2p.pru.PruAlgorithm

Sets the max degree of nodes

setUserLogFile(File, boolean) - Method in class edu.iu.iv.common.logging.IVCLogManager

setValue(int) - Method in class edu.iu.iv.search.p2p.bfs.QueueElement

This method sets the value of the element

setValue(Object) - Method in class edu.iu.iv.common.util.algorithmview.StringComponent

setValue(Object) - Method in class edu.iu.iv.common.util.algorithmview.IntComponent

setValue(Object) - Method in class edu.iu.iv.common.util.algorithmview.DoubleComponent

setValue(Object) - Method in class edu.iu.iv.common.util.algorithmview.BooleanComponent

setValue(Object) - Method in interface edu.iu.iv.common.util.algorithmview.AlgorithmViewComponent

Sets the value in the swing component.

setVar(double[][][]) - Method in class edu.iu.pcl.absurdist.gui.Plot

Sets the variable array.

setYearInformation(YearInformation) - Method in interface edu.iu.iv.modeling.tarl.input.PublicationParameters

Stores the YearInformation for the model

setYearInformation(YearInformation) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultPublicationParameters

Stores the YearInformation for the model

setYearInformation(YearInformation) - Method in class edu.iu.iv.modeling.tarl.input.impl.DefaultExecuterParameters

Stores the YearInformation for the model

show() - Method in class edu.iu.iv.common.gui.BasicIVCUserInterface

show() - Method in interface edu.iu.iv.core.IVCUserInterface

Shows the IVC Toolkit GUI to the user.

showDemo() - Method in class edu.iu.iv.visualization.prefusedemos.TreeMapDemo

showDemo() - Method in class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo

showDemo() - Method in class edu.iu.iv.visualization.prefusedemos.BalloonGraphDemo

showGUI() - Static method in class edu.iu.iv.toolkits.networkanalysistoolkit.gui.NetworkAnalysisToolkitGUI

This static method creates a new instance of this class and shows it inside a new JFrame, (unless it is already a JFrame).

SIMOStreamRedirecter - class edu.iu.iv.common.util.SIMOStreamRedirecter.

Single Input Multiple Output (SIMO) Stream Redirecter.

SIMOStreamRedirecter(InputStream, OutputStream[]) - Constructor for class edu.iu.iv.common.util.SIMOStreamRedirecter

Initializes the input stream reader and output stream writers.

SIMOStreamRedirecter(InputStream, OutputStream[], String[]) - Constructor for class edu.iu.iv.common.util.SIMOStreamRedirecter

Initializes the input stream reader and output stream writers.

SIMOStreamRedirecterTester - class edu.iu.iv.common.SIMOStreamRedirecterTester.

SIMOStreamRedirecterTester() - Constructor for class edu.iu.iv.common.SIMOStreamRedirecterTester

simpleConcepts() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether this concept system contains only simple, i.e.

SimpleDriver - class edu.iu.pcl.absurdist.driver.SimpleDriver.

Class SimpleDriver The main class to run ABSURDIST II with a simple command-line interface.

SimpleDriver() - Constructor for class edu.iu.pcl.absurdist.driver.SimpleDriver

simpleRelations() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Checks whether this concept system contains only simple, i.e.

size() - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Returns the number of authors in the Group

size() - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorDatabase

Returns the number of Authors in the Database

size() - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationGroup

Returns the number of Publications in the Group

size() - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationDatabase

Returns the number of Publications in the database

size() - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Returns the number of topics in the Group

size() - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicDatabase

Returns the number of Topics in the Database

size() - Method in interface edu.iu.iv.modeling.tarl.topic.TopicGroup

Returns the number of Topics in the Group

size() - Method in interface edu.iu.iv.modeling.tarl.topic.TopicDatabase

Returns the number of Topics in the database

size() - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Returns the number of publications in the Group

size() - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationDatabase

Returns the number of Publications in the Database

size() - Method in interface edu.iu.iv.modeling.tarl.author.AuthorGroup

Returns the number of Authors in the Group

size() - Method in interface edu.iu.iv.modeling.tarl.author.AuthorDatabase

Returns the number of Authors in the database

SoftwareArchitecturePlugin - class edu.iu.iv.help.SoftwareArchitecturePlugin.

A plugin that links to the software architecture document.

SoftwareArchitecturePlugin() - Constructor for class edu.iu.iv.help.SoftwareArchitecturePlugin

SparseDoubleMatrixModel - class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModel.

An adapter class that implements the DoubleMatrixModel interface and extends the Cern Colt API's fast hashed implementation of a sparse 2D matrix.

SparseDoubleMatrixModel(double[][]) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModel

Creates a matrix and fills them with the elements of the array passed in.

SparseDoubleMatrixModel(int, int) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModel

Creates a matrix with numRows rows and numCols columns and fills them with zero values.

SparseDoubleMatrixModelTest - class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModelTest.

SparseDoubleMatrixModelTest(String) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.SparseDoubleMatrixModelTest

Constructor for SparseDoubleMatrixModelTest.

SparseObjectMatrixModel - class edu.iu.iv.common.datamodels.matrixmodel.SparseObjectMatrixModel.

SparseObjectMatrixModel(int, int) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.SparseObjectMatrixModel

SparseObjectMatrixModel(Object[][]) - Constructor for class edu.iu.iv.common.datamodels.matrixmodel.SparseObjectMatrixModel

status - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Status of the system.

stem() - Method in class edu.iu.iv.preprocessing.porterstemmer.PorterStemmer

Stem the word placed into the Stemmer buffer through calls to add().

stem(File, File) - Method in class edu.iu.iv.preprocessing.porterstemmer.PorterStemmerGUI

StreamListener - interface edu.iu.iv.common.StreamListener.

StreamLogger - class edu.iu.iv.common.logging.StreamLogger.

StreamLogger(IOHandler, Logger) - Constructor for class edu.iu.iv.common.logging.StreamLogger

StreamLogger(IOHandler, Logger, File) - Constructor for class edu.iu.iv.common.logging.StreamLogger

StreamRedirecter - class edu.iu.iv.common.util.StreamRedirecter.

StreamRedirecter(InputStream, OutputStream) - Constructor for class edu.iu.iv.common.util.StreamRedirecter

StreamRedirecter(InputStream, OutputStream, String) - Constructor for class edu.iu.iv.common.util.StreamRedirecter

StringComponent - class edu.iu.iv.common.util.algorithmview.StringComponent.

An algorithm view component for editing Strings.

StringComponent() - Constructor for class edu.iu.iv.common.util.algorithmview.StringComponent

sum_1_far(int, int, int[]) - Method in class edu.iu.pcl.absurdist.common.CorrespondenceVector

sum_far_1(int, int, int[]) - Method in class edu.iu.pcl.absurdist.common.CorrespondenceVector

sum_far_far(int, int, int[], int[]) - Method in class edu.iu.pcl.absurdist.common.CorrespondenceVector

sumElem(double[][]) - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

Computes the sum of the elements in an array.

SUPPORTED_FILE_EXTENSION - Static variable in class edu.iu.iv.core.persistence.PersisterProperty

The file extension supported by this persister.

supports(Object) - Method in class edu.iu.iv.common.util.BasicURLPlugin

supports(Object) - Method in class edu.iu.iv.modeling.WattsStrogatzSmallWorldPlugin

supports(Object) - Method in class edu.iu.iv.preprocessing.PerlTermDocPlugin

supports(Object) - Method in class edu.iu.iv.preprocessing.porterstemmer.PorterStemmerPlugin

supports(Object) - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.NetworkAnalysisToolkitPlugin

supports(Object) - Method in class edu.iu.iv.modeling.p2p.can.CanPlugin

supports(Object) - Method in class edu.iu.iv.visualization.networks.jungfruchtermanrheingoldLayout.JUNGFruchtermanRheingoldLayoutPlugin

supports(Object) - Method in class edu.iu.iv.search.p2p.bfs.BreadthFirstSearchPlugin

supports(Object) - Method in interface edu.iu.iv.core.plugin.Plugin

Determines whether a model is supported by this plugin or not.

supports(Object) - Method in class edu.iu.iv.modeling.p2p.hypergrid.HypergridPlugin

supports(Object) - Method in class edu.iu.iv.common.plugin.BasicPlugin

supports(Object) - Method in class edu.iu.iv.modeling.p2p.attackTolerance.AttackTolerancePlugin

supports(Object) - Method in class edu.iu.iv.modeling.p2p.pru.PruPlugin

supports(Object) - Method in class edu.iu.iv.analysis.burst.BurstPlugin

supports(Object) - Method in class edu.iu.iv.visualization.networks.jungspringlayout.JUNGSpringLayoutPlugin

supports(Object) - Method in class edu.iu.iv.search.p2p.randomWalk.RandomWalkPlugin

supports(Object) - Method in class edu.iu.iv.modeling.p2p.chord.ChordPlugin

supports(Object) - Method in class edu.iu.iv.clustering.BetweennessCentralityPlugin

supports(Object) - Method in class edu.iu.iv.search.p2p.can.CanSearchPlugin

supports(Object) - Method in class edu.iu.iv.modeling.tarl.TarlPlugin

Returns whether the plugin supports the specified model

supports(Object) - Method in class edu.iu.iv.modeling.p2p.errorTolerance.ErrorTolerancePlugin

supports(Object) - Method in class edu.iu.iv.modeling.barabasialbertmodel.BarabasiAlbertModelPlugin

supports(Object) - Method in class edu.iu.iv.gui.save.SavePlugin

Should return true only if the model currently "in focus" can be persisted using some persister.

supports(Object) - Method in class edu.iu.iv.visualization.p2p.p2pnetworkvisualization.P2PNetworkVisualizationPlugin

supports(Object) - Method in class edu.iu.iv.gui.load.LoadPlugin

supports(Object) - Method in class edu.iu.iv.visualization.networks.jungcirclelayout.JUNGCircleLayoutPlugin

supports(Object) - Method in class edu.iu.iv.search.p2p.chord.ChordSearchPlugin

supports(Object) - Method in class edu.iu.iv.visualization.prefusedemos.ZoomingPanDemoPlugin

supports(Object) - Method in class edu.iu.iv.visualization.prefusedemos.TreeMapDemoPlugin

supports(Object) - Method in class edu.iu.iv.visualization.prefusedemos.RadialGraphDemoPlugin

supports(Object) - Method in class edu.iu.iv.visualization.prefusedemos.ForceDemoPlugin

supports(Object) - Method in class edu.iu.iv.visualization.prefusedemos.FisheyeMenuDemoPlugin

supports(Object) - Method in class edu.iu.iv.visualization.prefusedemos.DistortionDemoPlugin

supports(Object) - Method in class edu.iu.iv.visualization.prefusedemos.BalloonGraphDemoPlugin

supports(Object) - Method in class edu.iu.pcl.absurdist.AbsurdistPlugin

supports(Object) - Method in class edu.iu.iv.analysis.pathfindernetworkscaling.PFNETPlugin

supports(Object) - Method in class edu.iu.iv.preprocessing.perlstopwordremover.PerlStopWordRemoverPlugin

supports(Object) - Method in class edu.iu.iv.common.gui.pluginpropertyviewer.PluginPropertyViewerPlugin

supports(Object) - Method in class edu.iu.iv.help.AboutPlugin

supports(Object) - Method in class edu.iu.iv.analysis.perlvectorspacemodel.PerlVectorSpaceModelPlugin

supports(Object) - Method in class edu.iu.iv.modeling.p2p.randomnetwork.RandomNetworkPlugin

supports(Object) - Method in class edu.iu.iv.gui.ExitPlugin

Always returns true, since Exit doesn't care about models.

supports(Object) - Method in class edu.iu.iv.visualization.networks.jungkamadakawailayout.JUNGKamadaKawaiLayoutPlugin

supports(Object) - Method in class edu.iu.iv.gui.preferences.PreferencesPlugin

SystemCommandRunner - class edu.iu.iv.common.util.SystemCommandRunner.

SystemCommandRunner() - Constructor for class edu.iu.iv.common.util.SystemCommandRunner

SystemMatcher - interface edu.iu.pcl.absurdist.penalty.SystemMatcher.

A common interface for an algorithm for matching two concept systems.

systemN - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Target system for mapping.

systemO - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Source system for mapping.

systemsAreSimple - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

This will be set to true in the constructor if both concept systems being matched are "binary", that is have no other relationship weights than 1 and 0.