A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

R

RadialGraphDemo - class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo.

Demo application showcasing the use of an animated radial tree layout to visualize a graph.

RadialGraphDemo.DemoColorFunction - class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo.DemoColorFunction.

RadialGraphDemo.DemoColorFunction(int) - Constructor for class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo.DemoColorFunction

RadialGraphDemo() - Constructor for class edu.iu.iv.visualization.prefusedemos.RadialGraphDemo

RadialGraphDemoPlugin - class edu.iu.iv.visualization.prefusedemos.RadialGraphDemoPlugin.

RadialGraphDemoPlugin() - Constructor for class edu.iu.iv.visualization.prefusedemos.RadialGraphDemoPlugin

Constructor

RandomDriver - class edu.iu.pcl.absurdist.driver.RandomDriver.

Class RandomDriver: The main class to run a simple test for ABSURDIST (no GUI).

RandomDriver() - Constructor for class edu.iu.pcl.absurdist.driver.RandomDriver

RandomNetwork - class edu.iu.iv.modeling.p2p.randomnetwork.RandomNetwork.

Generates Erdos-Renyi Random Graph

RandomNetwork(int, double) - Constructor for class edu.iu.iv.modeling.p2p.randomnetwork.RandomNetwork

RandomNetworkAlgorithm - class edu.iu.iv.modeling.p2p.randomnetwork.RandomNetworkAlgorithm.

RandomNetworkAlgorithm(int, double) - Constructor for class edu.iu.iv.modeling.p2p.randomnetwork.RandomNetworkAlgorithm

RandomNetworkPlugin - class edu.iu.iv.modeling.p2p.randomnetwork.RandomNetworkPlugin.

RandomNetworkPlugin() - Constructor for class edu.iu.iv.modeling.p2p.randomnetwork.RandomNetworkPlugin

randomPermutation(int) - Static method in class edu.iu.pcl.absurdist.graph.Graph

Returns an array of integers, from 0 to n-1, randomly permuted.

RandomWalk - class edu.iu.iv.search.p2p.randomWalk.RandomWalk.

Random-Walk Search Algorithm

RandomWalk(Graph) - Constructor for class edu.iu.iv.search.p2p.randomWalk.RandomWalk

Constructor for RandomWalk Search Algorithm.

RandomWalk(Graph, int) - Constructor for class edu.iu.iv.search.p2p.randomWalk.RandomWalk

Constructor for RandomWalk Search Algorithm.

RandomWalkAlgorithm - class edu.iu.iv.search.p2p.randomWalk.RandomWalkAlgorithm.

Wrapper for Random Walk Search Algorithm

RandomWalkAlgorithm() - Constructor for class edu.iu.iv.search.p2p.randomWalk.RandomWalkAlgorithm

Empty Constructor

RandomWalkAlgorithm(Graph, int, int, int) - Constructor for class edu.iu.iv.search.p2p.randomWalk.RandomWalkAlgorithm

Constructor for RandomWalkAlgorithm.

RandomWalkCompleteTest - class edu.iu.iv.search.p2p.randomWalk.RandomWalkCompleteTest.

Test if the RandomWalk program functions correctly.

RandomWalkCompleteTest() - Constructor for class edu.iu.iv.search.p2p.randomWalk.RandomWalkCompleteTest

RandomWalkPlugin - class edu.iu.iv.search.p2p.randomWalk.RandomWalkPlugin.

Plugin for RandomWalk Search

RandomWalkPlugin() - Constructor for class edu.iu.iv.search.p2p.randomWalk.RandomWalkPlugin

Constructor

RandomWalkTest - class edu.iu.iv.search.p2p.randomWalk.RandomWalkTest.

JUnit test for RandomWalk

RandomWalkTest(String) - Constructor for class edu.iu.iv.search.p2p.randomWalk.RandomWalkTest

Constructor for RandomWalkTest.

rank - Variable in class edu.iu.pcl.absurdist.absurdist.Concept

Quantitative attribute in the range of [1, 10]; can be used to decide mapping priority.

rank2size(int) - Static method in class edu.iu.pcl.absurdist.gui.ConceptNode

Encodes concept rank into node size.

readBin(String) - Static method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Creates and reads a concept system from a binary file.

readFromFile(String) - Method in class edu.iu.iv.common.util.MenuConfigFile

Loads menu structure information from the given file.

readjustChi(double[][], double[][], double[][]) - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist

A normalization method that takes both exSim and inSim into account.

readTxt(String) - Static method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Creates and reads a concept system from a text file.

ReferencePagesPlugin - class edu.iu.iv.help.ReferencePagesPlugin.

A plugin that links to the reference pages website.

ReferencePagesPlugin() - Constructor for class edu.iu.iv.help.ReferencePagesPlugin

register(AlgorithmViewComponent) - Method in class edu.iu.iv.common.util.algorithmview.AlgorithmViewComponentRegistry

register an already instantiated algorithm view component.

register(Class, Class) - Method in class edu.iu.iv.common.util.algorithmview.AlgorithmViewComponentRegistry

registers the algorithm view component.

register(Persister) - Method in class edu.iu.iv.common.persistence.BasicPersistenceRegistry

register(Persister) - Method in interface edu.iu.iv.core.persistence.PersistenceRegistry

Registers the persister with the registry.

register(Plugin) - Method in interface edu.iu.iv.core.plugin.PluginRegistry

Adds the given plugin to the registry.

register(Plugin) - Method in class edu.iu.iv.common.plugin.BasicPluginRegistry

registerListener(StreamListener) - Method in class edu.iu.iv.common.IOHandler

registry - Static variable in class edu.iu.iv.visualization.prefusedemos.BalloonGraphDemo

Relation - class edu.iu.pcl.absurdist.absurdist.Relation.

Class Relation Specifies the data structure for a relation, which contains its involved concepts and some features.

Relation() - Constructor for class edu.iu.pcl.absurdist.absurdist.Relation

Creates an empty relation.

Relation(Relation) - Constructor for class edu.iu.pcl.absurdist.absurdist.Relation

Creates a copy of a relation sharing the same concepts.

Relation(Relation, Concept, Concept) - Constructor for class edu.iu.pcl.absurdist.absurdist.Relation

Creates a copy of a relation, using the specified concepts.

Relation(Relation, Concept, Concept, double) - Constructor for class edu.iu.pcl.absurdist.absurdist.Relation

Creates a copy of a relation, using the specified concepts, with some noise.

Relation(RelationModel, Concept, Concept) - Constructor for class edu.iu.pcl.absurdist.absurdist.Relation

Creates a relation of the specified model with default weight between two concepts.

Relation(RelationModel, Concept, Concept, boolean) - Constructor for class edu.iu.pcl.absurdist.absurdist.Relation

Creates a relation of the specified model with random weight if weighted between two concepts.

Relation(RelationModel, Concept, Concept, double) - Constructor for class edu.iu.pcl.absurdist.absurdist.Relation

Creates a relation with full features between two concepts.

RelationLink - class edu.iu.pcl.absurdist.gui.RelationLink.

Class RelationLink: Visual representation of a relation in a concept system graph.

RelationLink(Relation, ConceptSystem, ConceptGraph) - Constructor for class edu.iu.pcl.absurdist.gui.RelationLink

Creates a relation link by encoding its relation features.

RelationModel - class edu.iu.pcl.absurdist.absurdist.RelationModel.

Class RelationModel is the model for a particular type of relation, including specifications on its inherent properties.

RelationModel() - Constructor for class edu.iu.pcl.absurdist.absurdist.RelationModel

Constructor for a default relation model.

RelationModel(String, boolean) - Constructor for class edu.iu.pcl.absurdist.absurdist.RelationModel

Constructs a relation model of the specified label and direction feature.

relations - Variable in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

All relation instances in the system.

removeAddModelListener(AddModelListener) - Method in class edu.iu.iv.common.BasicIVC

removeAddModelListener(AddModelListener) - Method in class edu.iu.iv.core.IVC

Removes an add model listener from the list of those that will be notified when a model is added to the IVC.

removeAll() - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorDatabase

Removes all the Authors from the database

removeAll() - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationDatabase

Removes all the Publications from the database

removeAll() - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicDatabase

Removes all the Topics from the database

removeAll() - Method in interface edu.iu.iv.modeling.tarl.topic.TopicDatabase

Removes all the Topics from the database

removeAll() - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationDatabase

Removes all the Publications from the database

removeAll() - Method in interface edu.iu.iv.modeling.tarl.author.AuthorDatabase

Removes all the Authors from the database

removeAllAuthors() - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Removes all the Authors from the Group

removeAllAuthors() - Method in interface edu.iu.iv.modeling.tarl.author.AuthorGroup

Removes all the Author from the Group

removeAllPublications() - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationGroup

Removes all the Publication from the Group

removeAllPublications() - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Removes all the Publications from the Group

removeAllTopics() - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Removes all the Topics from the Group

removeAllTopics() - Method in interface edu.iu.iv.modeling.tarl.topic.TopicGroup

Removes all the Topic from the Group

removeAuthor(Author) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Removes the Author from the Group

removePublication(Publication) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Removes the Publication from the Group

removeRelation(int, int, Relation) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Removes the specified relation from the relation list between concept i and concept j; if this causes the list to be empty, remove the list from the system.

removeRelations(int, int) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Removes the relation list between concept i and concept j.

removeTopic(Topic) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Removes the Topic from the Group

reset() - Method in class edu.iu.iv.modeling.barabasialbertmodel.BarabasiAlbertModelGenerator

resetL - Static variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

If true, we recompute the learning rate at each step, for fastest convergence.

resetSearchIndex() - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorDatabase

Resets the Search Index so the Database can be searched iteratively

resetSearchIndex() - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationDatabase

Resets the Search Index to the start of the list of Publications.

resetSearchIndex() - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicDatabase

Resets the Search Index so the Database can be searched iteratively

resetSearchIndex() - Method in interface edu.iu.iv.modeling.tarl.topic.TopicDatabase

Resets the Search Index to the start of the list of Topics.

resetSearchIndex() - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationDatabase

Resets the Search Index so the Database can be searched iteratively

resetSearchIndex() - Method in interface edu.iu.iv.modeling.tarl.author.AuthorDatabase

Resets the Search Index to the start of the list of Authors.

Resource - class resources.Resource.

This Class is placed in the resources directory of this jar so that we can grab out resources from the jar easily.

Resource() - Constructor for class resources.Resource

ResourceDescriptor - interface edu.iu.iv.core.persistence.ResourceDescriptor.

The ResourceDescriptor is the top level interfaces from which all other ResourceDescriptors are derived, such as FileResourceDescriptor.

resources - package resources

RESTORABLE_MODEL_DESCRIPTION - Static variable in class edu.iu.iv.core.persistence.PersisterProperty

The description of the data model that can be restored by a persister.

RESTORABLE_MODEL_NAME - Static variable in class edu.iu.iv.core.persistence.PersisterProperty

The name of the data model that can be restored by a persister.

restore(ResourceDescriptor) - Method in class edu.iu.iv.common.persistence.ivc.DummySMFPersister

restore(ResourceDescriptor) - Method in class edu.iu.iv.common.persistence.ivc.DelimitedSparseDoubleMatrixModelPersister

restore(ResourceDescriptor) - Method in class edu.iu.iv.common.persistence.ivc.DelimitedDenseDoubleMatrixModelPersister

restore(ResourceDescriptor) - Method in interface edu.iu.iv.core.persistence.Persister

Restores a model from the specified resource.

restore(ResourceDescriptor) - Method in class edu.iu.iv.common.persistence.standard.JUNGGraphPajekPersister

restore(ResourceDescriptor) - Method in class edu.iu.iv.common.persistence.standard.JUNGGraphMLPersister

restore(ResourceDescriptor) - Method in class edu.iu.iv.common.persistence.standard.HarwellBoeingMatrixModelPersister

results - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

rowSum() - Method in class edu.iu.pcl.absurdist.common.CorrespondenceVector

Lazy evaluation for f(a)=C(a,All)=sum_b{C(a,b)}

rpt - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Experiment repetition count, for statistics

run() - Method in class edu.iu.iv.common.util.StreamRedirecter

run() - Method in class edu.iu.iv.common.util.SIMOStreamRedirecter

run() - Method in class edu.iu.iv.common.util.AbstractBufferMonitor

Checks this monitor's buffer for new data every 100 ms and appends any it finds to the console.

run(ItemRegistry, double) - Method in class edu.iu.iv.visualization.prefusedemos.TreeMapDemo.TreeMapSizeFunction

run(ItemRegistry, double) - Method in class edu.iu.iv.visualization.prefusedemos.FisheyeMenuDemo.VerticalLineLayout

run(String) - Method in class edu.iu.iv.common.util.SystemCommandRunner

run(String) - Method in class edu.iu.iv.common.util.binaryexecutable.BinaryExecutableRunner

run(String) - Method in class edu.iu.iv.common.util.perl.PerlRunner

run(String, List) - Method in class edu.iu.iv.common.util.binaryexecutable.BinaryExecutableRunner

run(String, List) - Method in class edu.iu.iv.common.util.perl.PerlRunner

run(String, String[]) - Method in class edu.iu.iv.common.util.binaryexecutable.BinaryExecutableRunner

run(String, String[]) - Method in class edu.iu.iv.common.util.perl.PerlRunner

runDemo() - Method in class edu.iu.iv.visualization.prefusedemos.ForceDemo

runModel() - Method in class edu.iu.iv.modeling.tarl.main.impl.DefaultTarlHelper

Runs the Tarl model

runModel() - Method in interface edu.iu.iv.modeling.tarl.main.TarlHelper

Runs the Tarl model.

runNow(Algorithm) - Method in class edu.iu.iv.common.QueueScheduler

runNow(Algorithm) - Method in interface edu.iu.iv.core.Scheduler

Schedules an algorithm to be run immediately.