A B C D E F G H I J K L M N O P Q R S T U V W X Y Z

A

AboutPlugin - class edu.iu.iv.help.AboutPlugin.

Implements the Help -> About.

AboutPlugin() - Constructor for class edu.iu.iv.help.AboutPlugin

AbstractAuthorUtility - class edu.iu.iv.modeling.tarl.author.AbstractAuthorUtility.

This abstract class defines the functions in order to filter Authors based on their attributes.

AbstractAuthorUtility() - Constructor for class edu.iu.iv.modeling.tarl.author.AbstractAuthorUtility

AbstractBufferMonitor - class edu.iu.iv.common.util.AbstractBufferMonitor.

AbstractBufferMonitor(InputStream) - Constructor for class edu.iu.iv.common.util.AbstractBufferMonitor

AbstractPublicationUtility - class edu.iu.iv.modeling.tarl.publication.AbstractPublicationUtility.

This abstract class defines the functions in order to filter Publications based on their attributes.

AbstractPublicationUtility() - Constructor for class edu.iu.iv.modeling.tarl.publication.AbstractPublicationUtility

Absurdist - class edu.iu.pcl.absurdist.absurdist.Absurdist.

Class Absurdist provides the ABSURDIST II graph matching algorithms to compute the correspondence between two concept systems, and finds the optimal mappings between them.

Absurdist.Results - class edu.iu.pcl.absurdist.absurdist.Absurdist.Results.

Used for reporting.

Absurdist.Results() - Constructor for class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Absurdist() - Constructor for class edu.iu.pcl.absurdist.absurdist.Absurdist

Creates an empty absurdist system.

Absurdist(ConceptSystem, ConceptSystem) - Constructor for class edu.iu.pcl.absurdist.absurdist.Absurdist

Creates an absurdist system containing the source and target concept systems and random external similarities.

AbsurdistLauncherGUI - class edu.iu.pcl.absurdist.AbsurdistLauncherGUI.

AbsurdistLauncherGUI(String, boolean, boolean, boolean, boolean) - Constructor for class edu.iu.pcl.absurdist.AbsurdistLauncherGUI

AbsurdistPlugin - class edu.iu.pcl.absurdist.AbsurdistPlugin.

AbsurdistPlugin() - Constructor for class edu.iu.pcl.absurdist.AbsurdistPlugin

accept(File) - Method in class edu.iu.iv.search.p2p.can.XmlFileFilter

Return true if this file should be shown in the directory pane, false if it shouldn't.

acceptVertex(Vertex) - Method in class edu.iu.iv.toolkits.networkanalysistoolkit.analysis.ThresholdVertexFilter

accuracy - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Mapping accuracy based on internal similarity.

accuracy2 - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Squares of the averaged values; maintained so that we can compute standard deviation

accuracyDev - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Standard deviations

actionPerformed(ActionEvent) - Method in class edu.iu.pcl.absurdist.driver.AppletDriver

add(Absurdist.Results) - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Adds the results of one more experiment.

add(char) - Method in class edu.iu.iv.preprocessing.porterstemmer.PorterStemmer

Add a character to the word being stemmed.

add(char[], int) - Method in class edu.iu.iv.preprocessing.porterstemmer.PorterStemmer

Adds wLen characters to the word being stemmed contained in a portion of a char[] array.

addAddModelListener(AddModelListener) - Method in class edu.iu.iv.common.BasicIVC

addAddModelListener(AddModelListener) - Method in class edu.iu.iv.core.IVC

Adds an add model listener to the IVC.

addAnchor(int, String) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Adds another "anchor" (information about formerly attached leaf) to the inner node.

addAuthor(Author) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Adds an Author to the group only if it is not already present in the group

addAuthor(Author) - Method in interface edu.iu.iv.modeling.tarl.util.AuthorsTopicBucket

Adds an Author only if his/her Topic is the same as that of the Bucket

addAuthor(Author) - Method in class edu.iu.iv.modeling.tarl.util.impl.DefaultAuthorsTopicBucket

Adds an Author only if his/her Topic is the same as that of the Bucket.

addAuthor(Author) - Method in interface edu.iu.iv.modeling.tarl.author.AuthorGroup

Adds an Author to the group

addAuthor(Topic) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorManager

Adds an Author to the environment with the specified Topic.

addAuthor(Topic) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorDatabase

Adds an Author to the list

addAuthor(Topic) - Method in interface edu.iu.iv.modeling.tarl.author.AuthorManager

Adds an Author to the environment with the specified Topic.

addAuthor(Topic) - Method in interface edu.iu.iv.modeling.tarl.author.AuthorDatabase

Adds a new Author to the database with the specified Topic.

addAuthor(Topic, int) - Method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorDatabase

Adds an Author to the list

addAuthor(Topic, int) - Method in interface edu.iu.iv.modeling.tarl.author.AuthorDatabase

Adds a new Author to the database with the specified Topic and maximum age.

addCategory(String) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Adds a concept category.

addCitation(Publication) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublication

Adds a Citation to the group of citations of the Publication

addConcept(Concept) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Adds a concept.

addExtension(String) - Method in class edu.iu.iv.search.p2p.can.XmlFileFilter

Adds a filetype "dot" extension to filter against.

addModel(Object) - Method in class edu.iu.iv.common.BasicIVC

addModel(Object) - Method in class edu.iu.iv.common.gui.BasicIVCUserInterface

addModel(Object) - Method in class edu.iu.iv.core.IVC

Adds a model to the system.

addModel(Object) - Method in interface edu.iu.iv.core.AddModelListener

Adds a model to this listener.

addModel(RelationModel) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Adds a relation model.

AddModelListener - interface edu.iu.iv.core.AddModelListener.

Interface for objects that need to be notified when a model is to be added.

addNoise(double) - Method in class edu.iu.pcl.absurdist.absurdist.Relation

Adds some noise to the relation's weight.

addNoise(double) - Method in class edu.iu.pcl.absurdist.absurdist.Concept

Adds some noise to this concept's feature values.

addNoise(double, double, double, double) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

Adds some noise to this system.

addPreferencesPane(PreferencesPane) - Method in class edu.iu.iv.gui.preferences.PreferencesGUI

addPublication(int, Topic, AuthorGroup) - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationDatabase

Adds a new Publication to the database with the specified year of publication, Topic and the group of Authors.

addPublication(int, Topic, AuthorGroup) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationDatabase

Adds a Publication to the group

addPublication(int, Topic, AuthorGroup, PublicationGroup) - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationDatabase

Adds a new Publication to the database with the specified year of publication, Topic and the group of Authors and the group of Publications.

addPublication(int, Topic, AuthorGroup, PublicationGroup) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationDatabase

Adds a Publication to the group

addPublication(Publication) - Method in interface edu.iu.iv.modeling.tarl.publication.PublicationGroup

Adds a Publication to the group

addPublication(Publication) - Method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Adds a Publication to the group only if it is not already present in the group

addTopic() - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicDatabase

Adds a Topic to the list

addTopic() - Method in interface edu.iu.iv.modeling.tarl.topic.TopicDatabase

Adds a new default Topic to the database.

addTopic(Topic) - Method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Adds a Topic to the group only if it is not already present in the group

addTopic(Topic) - Method in interface edu.iu.iv.modeling.tarl.topic.TopicGroup

Adds a Topic to the group

adjBest - Static variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

If true, we'll find the optimal permutation (this may be very expensive!)

adjustCoeff() - Method in class edu.iu.pcl.absurdist.penalty.PenaltyMinimizer

AgingHelperInterface - interface edu.iu.iv.modeling.tarl.publication.AgingHelperInterface.

The Aging Helper provides utility functions in order to successfully implement the aging process of citations in the TARL model.

Alert - class edu.iu.pcl.absurdist.gui.Alert.

An auxiliary dialog window, convenient to pop up a debug window and wait for the user to respond.

alert(String) - Static method in class edu.iu.pcl.absurdist.gui.Alert

Blocking methiod: Pops up a message window, and hangs there until the "continue" button is pressed.

Algorithm - interface edu.iu.iv.core.Algorithm.

An algorithm.

AlgorithmView - class edu.iu.iv.common.util.algorithmview.AlgorithmView.

A dynamically generated view of an Algorithm.

AlgorithmView(String, Algorithm) - Constructor for class edu.iu.iv.common.util.algorithmview.AlgorithmView

given a properly created algorithm and its title, creates a view to be shown in the user interface of the algorithm.

AlgorithmView(String, Algorithm, Object, Object) - Constructor for class edu.iu.iv.common.util.algorithmview.AlgorithmView

given a properly created algorithm, its title, and optional validator and descriptor objects, creates a view to be shown in the user interface of the algorithm.

AlgorithmView(String, Algorithm, Object, Object, Object) - Constructor for class edu.iu.iv.common.util.algorithmview.AlgorithmView

given a properly created algorithm, its title, and optional validator and descriptor objects, creates a view to be shown in the user interface of the algorithm.

AlgorithmViewComponent - interface edu.iu.iv.common.util.algorithmview.AlgorithmViewComponent.

A component used by the algorithm view.

AlgorithmViewComponentRegistry - class edu.iu.iv.common.util.algorithmview.AlgorithmViewComponentRegistry.

A registry used for getting a properly instantiated AlgorithmViewComponent given a class that will need to be edited.

allAnchorCnt() - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

How many anchors are in this system?

allSum() - Method in class edu.iu.pcl.absurdist.common.CorrespondenceVector

alpha - Variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

Coefficients for external similarity.

alphaShare - Static variable in class edu.iu.pcl.absurdist.absurdist.Absurdist

This flag determines the alpha/(alpha+beta) ratio to be used in adjustCoeff(); it only is used if useAlphaShare is true, and is ignored otherwise.

anchorOverlap(ConceptSystem, int, int) - Method in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

How many achors do Concept i of this system and Concept iother of the other system have in common?

anchors - Variable in class edu.iu.pcl.absurdist.absurdist.ConceptSystem

This is a vector that is either null (if no anchors are in use), or is of the same length as "concepts".

animate - Static variable in class edu.iu.iv.visualization.prefusedemos.BalloonGraphDemo

AppletDriver - class edu.iu.pcl.absurdist.driver.AppletDriver.

Class AppletDriver is the Applet to run ABSURDIST II in a interactive GUI.

AppletDriver() - Constructor for class edu.iu.pcl.absurdist.driver.AppletDriver

ApplicDriver - class edu.iu.pcl.absurdist.driver.ApplicDriver.

Class ApplicDriver is used to run AppletDriver as an application, rather than an applet.

ApplicDriver() - Constructor for class edu.iu.pcl.absurdist.driver.ApplicDriver

applyScaling() - Method in class edu.iu.iv.analysis.pathfindernetworkscaling.PFNET

areSetEqual(AuthorGroup, AuthorGroup) - Static method in class edu.iu.iv.modeling.tarl.author.impl.DefaultAuthorGroup

Tests whether the two AuthorGroups are equal or not in terms of Set Equality.

areSetEqual(Collection, Collection) - Static method in class edu.iu.iv.modeling.tarl.util.impl.ExtendedHashSet

Tests whether the two Collections are equal or not in terms of Set Equality.

areSetEqual(PublicationGroup, PublicationGroup) - Static method in class edu.iu.iv.modeling.tarl.publication.impl.DefaultPublicationGroup

Tests whether the two PublicationGroups are equal or not in terms of Set Equality.

areSetEqual(TopicGroup, TopicGroup) - Static method in class edu.iu.iv.modeling.tarl.topic.impl.DefaultTopicGroup

Tests whether the two TopicGroups are equal or not in terms of Set Equality.

ARROW - Static variable in class edu.iu.pcl.absurdist.gui.RelationLink

AttackTolerance - class edu.iu.iv.modeling.p2p.attackTolerance.AttackTolerance.

Perform Attack Tolerance Test on the network graph.

AttackTolerance(Graph, int) - Constructor for class edu.iu.iv.modeling.p2p.attackTolerance.AttackTolerance

Constructor for AttackTolerance.

AttackToleranceAlgorithm - class edu.iu.iv.modeling.p2p.attackTolerance.AttackToleranceAlgorithm.

Wrapper for AttackTolerance Test

AttackToleranceAlgorithm(Graph, int) - Constructor for class edu.iu.iv.modeling.p2p.attackTolerance.AttackToleranceAlgorithm

Constructor for AttackTolerance.

AttackTolerancePlugin - class edu.iu.iv.modeling.p2p.attackTolerance.AttackTolerancePlugin.

Attack Tolerance Test Plugin

AttackTolerancePlugin() - Constructor for class edu.iu.iv.modeling.p2p.attackTolerance.AttackTolerancePlugin

Author - interface edu.iu.iv.modeling.tarl.author.Author.

This interface defines an Author by defining the necessary functions it should support.

AUTHOR - Static variable in class edu.iu.iv.core.plugin.PluginProperty

Represents the property for the Author of the algorithm the plugin is written around.

AuthorDatabase - interface edu.iu.iv.modeling.tarl.author.AuthorDatabase.

This interface defines the AuthorDatabase which is used to store all the Authors ever produced in the system.

AuthorGroup - interface edu.iu.iv.modeling.tarl.author.AuthorGroup.

This interface defines the functions to represent a group of Authors.

AuthorManager - interface edu.iu.iv.modeling.tarl.author.AuthorManager.

This interface defines all the high-level functions related to the Author environment.

authorMap - Variable in class edu.iu.iv.modeling.tarl.output.impl.DefaultOutputWriter

Stores an array to map the author id integers to the Pajek identifiers

authorOffset - Variable in class edu.iu.iv.modeling.tarl.output.impl.DefaultOutputWriter

Stores the offset for the author list in the Pajek file if publications are included

AuthorParameters - interface edu.iu.iv.modeling.tarl.input.AuthorParameters.

This interface defines the Parameters for the AuthorManager module of Tarl.

authors - Variable in class edu.iu.iv.modeling.tarl.output.impl.DefaultOutputWriter

Stores the AuthorGroupInterface for the model

AuthorsTopicBucket - interface edu.iu.iv.modeling.tarl.util.AuthorsTopicBucket.

This interface defines the concept of a group of Authors all having the same Topic.

averages() - Method in class edu.iu.pcl.absurdist.absurdist.Absurdist.Results

Computes averages and standard deviations